PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001202
Common NameLOC102589520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 415aa    MW: 44261.6 Da    PI: 7.6379
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001202genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.3e-4091218289
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s + 
  PGSC0003DMP400001202  91 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSVPs 179
                           789******************************************************************99987777777777555555 PP

                   TCP  89 ......................................k 89 
                                                                 +
  PGSC0003DMP400001202 180 qlrssyfnpnfslsqrrglfppgiglstdtsattllnfQ 218
                           566667777777777777777777776655555555541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-4395268IPR005333Transcription factor, TCP
PROSITE profilePS5136927.50597151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDGGGDDHLH QHHQHHHQHN HRPIATFPFQ LLEKKEDEAC SSSSNAAAAY TTSLAISNTD  60
NTHTNPNNTP RSTTSTLQIS ASGADTSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR  120
VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ  180
LRSSYFNPNF SLSQRRGLFP PGIGLSTDTS ATTLLNFQSA NLSPNMQLQT KPELRDNSID  240
LTESSPAEDN LSRKRRSDLD LEQQQHQQQQ QMGSYLLQSS TGPMPTGHSS IPANFWMVTN  300
PIPSNQVMGG DPIWPFQSVS NSGAAAALYR GTMPSGLQFM NFPTPVALLP SQQLGGGSSG  360
GGGNNGLGEG QLGMFAGLNP YRGGGGVSES QASGSHSHHG GGTDDRHDTT SHHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963340.0GQ496334.1 Solanum lycopersicum TCP transcription factor 16 (TCP16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364185.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z002e-60TCP14_ARATH; Transcription factor TCP14
TrEMBLM0ZIS90.0M0ZIS9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000016130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.15e-46TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]