PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400001202

Common Name

LOC102589520

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 415aa MW: 44261.6 Da PI: 7.6379

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400001202	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.3e-40	91	218	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + PGSC0003DMP400001202 91 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSVPs 179 789******************************************************************99987777777777555555 PP TCP 89 ......................................k 89 + PGSC0003DMP400001202 180 qlrssyfnpnfslsqrrglfppgiglstdtsattllnfQ 218 566667777777777777777777776655555555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.0E-43	95	268	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.505	97	151	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDGGGDDHLH QHHQHHHQHN HRPIATFPFQ LLEKKEDEAC SSSSNAAAAY TTSLAISNTD 60 NTHTNPNNTP RSTTSTLQIS ASGADTSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR 120 VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ 180 LRSSYFNPNF SLSQRRGLFP PGIGLSTDTS ATTLLNFQSA NLSPNMQLQT KPELRDNSID 240 LTESSPAEDN LSRKRRSDLD LEQQQHQQQQ QMGSYLLQSS TGPMPTGHSS IPANFWMVTN 300 PIPSNQVMGG DPIWPFQSVS NSGAAAALYR GTMPSGLQFM NFPTPVALLP SQQLGGGSSG 360 GGGNNGLGEG QLGMFAGLNP YRGGGGVSES QASGSHSHHG GGTDDRHDTT SHHS*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDGGGDDHLH QHHQHHHQHN HRPIATFPFQ LLEKKEDEAC SSSSNAAAAY TTSLAISNTD  60
NTHTNPNNTP RSTTSTLQIS ASGADTSKKP PPKRTSTKDR HTKVDGRGRR IRMPALCAAR  120
VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSVPSQ  180
LRSSYFNPNF SLSQRRGLFP PGIGLSTDTS ATTLLNFQSA NLSPNMQLQT KPELRDNSID  240
LTESSPAEDN LSRKRRSDLD LEQQQHQQQQ QMGSYLLQSS TGPMPTGHSS IPANFWMVTN  300
PIPSNQVMGG DPIWPFQSVS NSGAAAALYR GTMPSGLQFM NFPTPVALLP SQQLGGGSSG  360
GGGNNGLGEG QLGMFAGLNP YRGGGGVSES QASGSHSHHG GGTDDRHDTT SHHS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	SRKRRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496334	0.0	GQ496334.1 Solanum lycopersicum TCP transcription factor 16 (TCP16) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364185.1	0.0	PREDICTED: transcription factor TCP14
Swissprot	Q93Z00	2e-60	TCP14_ARATH; Transcription factor TCP14
TrEMBL	M0ZIS9	0.0	M0ZIS9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400001613	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	5e-46	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400001202
Entrez Gene	102589520

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]